scimap
0.14.0 (2021-04-10)
Included sm.tl.foldchange
function. Also calculated p-val by Fisher exact test
0.12.0 (2021-02-12)
Included sm.pl.voronoi
function. Now possible to draw voronoi diagram of the images using X/Y coordinates
0.11.0 (2021-01-30)
Included spatial_pscore
function
0.10.0 (2020-11-27)
Included stacked_barplot
function to generate a stacked barplot from any two cloumns
0.9.0 (2020-11-21)
Updated pl.image_viewer
and pl.gate_finder
functions -
Implemeted Zarr functionality for napari viz.
0.8.7 (2020-11-18)
Updated pl.spatial_interaction
function to include two additional parameters -
subset_phenotype
and subset_neighbour_phenotype
.
0.8.3 (2020-11-16)
Added hl.add_roi
function. Used to incorporate ROI's extracted from Omero into the scimap object.
0.8.0 (2020-11-09)
Updated pp.mcmicro_to_scimap
function. Added a new parameter unique_CellId
Added a helper function scimap_to_csv
to save the andata object as a CSV.
Added documentation and tests for scimap_to_csv
0.7.10 (2020-10-30)
Updated pp.rescale
function. If a gate is included in the manual_gate.csv
file but no gate value is provided, the algorithm simply scales the data between
0-1 without changing the undelying structure.
0.7.6 (2020-10-27)
Updated hl.spatial_distance
to include option to convert to
log scale and also pass multiple distance_to
parameter.
0.7.5 (2020-10-27)
Updated hl.classify
to improve speed
0.7.3 (2020-10-27)
Addition of binary view in pl.spatial_interaction
0.7.2 (2020-10-26)
Addition of hl.classify
function.
Documentation for hl.classify
function.
Readme file modification